Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PCPG | rs12886808 | chr14:74477206 | G/A | 1.4E-6 | 178 | 25.17 | 29.4 | 4.5 | KM Plot |
| PCPG | rs12887033 | chr14:74292128 | C/T | 1.1E-5 | 176 | 25.87 | 25.63 | 10.3 | KM Plot |
| PCPG | rs12887106 | chr14:74496782 | A/G | 4.8E-7 | 176 | 25.28 | 27.43 | 7.4 | KM Plot |
| PCPG | rs12888554 | chr14:74514388 | C/T | 0.000221 | 175 | 25.4 | 27.43 | 10.43 | KM Plot |
| PCPG | rs12889182 | chr14:74671355 | A/T | 4.65E-5 | 176 | 25.53 | 26.88 | 9.13 | KM Plot |
| PCPG | rs12889747 | chr14:74553714 | A/C | 2.24E-5 | 176 | 25.4 | 27.43 | 10.3 | KM Plot |
| PCPG | rs12890479 | chr14:74502281 | C/G | 0.000221 | 175 | 25.4 | 27.43 | 10.43 | KM Plot |
| PCPG | rs12890967 | chr14:74296119 | G/T | 2.44E-5 | 178 | 7.48 | 26.92 | 25.77 | KM Plot |
| PCPG | rs12892608 | chr14:74469188 | T/C | 4.63E-7 | 175 | 25.28 | 30.93 | 7.4 | KM Plot |
| PCPG | rs12892635 | chr14:74305480 | T/A | 5.15E-6 | 172 | 25.47 | 27.75 | 10.43 | KM Plot |
| PCPG | rs12894825 | chr14:74450752 | C/T | 3.14E-6 | 178 | 25.17 | 29.7 | 10.3 | KM Plot |
| PCPG | rs12895268 | chr14:74658029 | C/T | 1.82E-5 | 178 | 25.4 | 27.75 | 10.3 | KM Plot |
| PCPG | rs12895829 | chr14:74406800 | C/G | 1.03E-5 | 176 | 25.28 | 28.38 | 10.43 | KM Plot |
| PCPG | rs12896058 | chr14:74658493 | C/T | 1.82E-5 | 178 | 25.4 | 27.75 | 10.3 | KM Plot |
| PCPG | rs12897095 | chr14:74336737 | A/G | 9.6E-6 | 178 | 25.47 | 28.3 | 10.3 | KM Plot |